Europe PMC

Europe PMC life-science literature — search, citations, references, full text, books, supplementary files, text-mined annotations and grants.

14 endpoints77 calls12/14 passing
Get API key

Text-mined entities for named articles. This replaces the retired textMinedTerms route; one unfiltered article can exceed 130 KB, so the body is read under a ceiling.

GET/v1/…europepmc/annotations-by-article
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Try it

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Parameters

articleIds

string · query · required

One or more SOURCE:ID pairs separated by commas, such as MED:33301246,PMC:PMC7745181. Up to 8 per call.

type

enum · query · optional

Restrict to one entity type. Default all types.

section

enum · query · optional

Restrict to one article section. Default all sections.

annotationProvider

string · query · optional

Restrict to one annotation provider. Default all providers.

Example response

{"project":"research:europepmc",  "data": {"count":1,    "items": [      {"id":"33301246","count":8,"pmcid":"PMC7745181","source":"MED",        "annotations": [          {            "tags": [              {"uri":"http://linkedlifedata.com/resource/umls-concept/C3714514","name":"infestations and infections"              }            ],"type":"Diseases","exact":"infection","prefix":"coronavirus 2 (SARS-CoV-2)","postfix":"and the resulting","section":"Abstract (http://purl.org/dc/terms/abstract)","frequency":null,"annotationId":"http://europepmc.org/article/MED/33301246#europepmc-2faf2bd76e3bbc392264592dd9233545","annotationProvider":"Europe PMC"          },          {            "tags": [              {"uri":"http://linkedlifedata.com/resource/umls-concept/C5203670","name":"caused by sarscov2"              }            ],"type":"Diseases","exact":"coronavirus disease 2019","prefix":"and the resulting","postfix":"disease 2019 (Covid-19)","section":"Abstract (http://purl.org/dc/terms/abstract)","frequency":null,"annotationId":"http://europepmc.org/article/MED/33301246#europepmc-7e5d5f7cd73d9b67569981d4a0b22dcb","annotationProvider":"Europe PMC"          }        ],        "fullTextIds": [          "PMC7745181"        ]      }    ],"provider":"europepmc",    "articleIds": [      "MED:33301246"    ]  },"timestamp":"2026-08-30T00:49:26Z"}

Errors

  • 401Missing or invalid x-api-key
  • 404Not found or private
  • 429Rate limit or monthly quota reached

Code

const data = await client.run(  "research:europepmc",  "annotations-by-article",  { articleIds: "MED:33301246", type: "Diseases", section: "Abstract", annotationProvider: "Europe PMC" });